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Glossary
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absorption spectrum
A chart indicating which wavelengths of light are absorbed by a given
pigment.
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Acetyl-CoA
Coenzyme A (CoA) is adapted from pantothenic acid and adenosine
triphosphate and used in metabolism in areas such as fatty acid oxidization and
citric acid cycles. Its main function is to carry acyl groups such as acetyl as
thioesters. A molecule of Coenzyme A carrying an acetyl group is also referred
to as Acetyl-CoA.
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action spectrum
A chart indicating the activity of a metabolic process, such as
photosynthesis, in relation to different wavelengths of light.
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activation energy
The activation energy in chemistry is the energy needed by a
system to initiate a particular process. Activation energy is often used to
denote the minimum energy needed for a specific chemical reaction to occur.
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active sites
The location on an enzyme where catalysis takes place; location of
substrate binding.
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active transport
Active transport is transport across a membrane that relies on
chemical energy. In this form of transport, molecules move against either an
electrical or concentration gradient (collectively termed an electrochemical
gradient). There are two main types, primary and secondary.
Primary transport involves the consumption of metabolic energy (often in the
form of ATP) and is directly coupled to movement across a membrane, independent
of any other species. Secondary transport concerns the diffusion of one species
across a membrane to drive the transport of another. Transporters generally are
membrane-spanning or "transmembrane" or integral membrane proteins.
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ADP
Adenosine diphosphate is formed when ATP is hydrolyzed and
gives up a phosphate. It can also be formed by a condensation reaction
binding adenosine monophosphate (AMP) with a phosphate.
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Aerobic Respiration
The stepwise process by which organisms oxidize glucose to produce ATP
and reduced cofactors; includes glycolysis, pyruvate oxidation, the Krebs cycle,
and oxidative phosporylation. Oxygen is the final electron acceptor in this
process.
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allele
An allele is any one of a number of alternative forms of
the same gene occupying a given locus (position) on a chromosome. An example is
the gene for blossom color in many species of flower - a single gene controls
the color of the petals, but there may be several different versions of the
gene. One version might result in red petals, while another might result in
white petals.
Many organisms are diploid - that is, they have two sets of
homologous chromosomes in their somatic cells, and thus contain two copies of
each gene. An organism in which both copies of the gene are identical - that is,
have the same allele - is said to be homozygous for that gene. An organism which
has two different alleles of the gene is said to be heterozygous. Often one
allele is "dominant" and the other is "recessive" - the "dominant" allele will
determine what trait is expressed. For example, in the case of blossom color, if
the "red" allele is dominant to the "white" allele, in a heterozygous flower
(with one red and one white allele), the petals will be red. An exception is "codominance",
where both alleles are active - a blending of traits may result, e.g. pink
petals.
A wild type allele is an allele which is considered to be
"normal" for the organism in question, as opposed to a mutant allele which is
usually a relatively new modification.
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allosteric enzymes
Enzymes with multiple binding sites for substrates and/or repressors;
binding of one molecule of substrate or repressor makes binding of a second
molecule more likely to occur.
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amino acid
In chemistry, an amino acid is any molecule that contains
both amino and carboxylic acid functional groups.
In biochemistry, this term is frequently used to refer to alpha amino acids,
that is, those amino acids in which the amino and carboxylate functionalities
are attached to the same carbon.
There are 20 amino acids which are directly expressed in the genetic code. If
a protein contains a different amino acid it must have been modified after
translation. These modifications are often essential for the function of the
protein. Over 500 amino acids have been found in nature.
The generalized structure of alpha amino acids is:
COOH
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H-C-R
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NH2
Where "R" represents a side chain specific to each particular amino acid.
Amino acids are usually classified by properties of the side chain into four
groups: acidic, basic, hydrophilic (polar), and hydrophobic (nonpolar).
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anabolism
Anabolism encompasses the processes of cell metabolism in which the cell uses
energy and reducing power to construct complex molecules and perform other
biological functions.
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anti-parallel
Refers to the nature of the two strands of the DNA double helix - one
strand runs in the 5' to 3' direction, while the other runs in the 3' to 5'
direction.
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antiports
Integral membrane proteins that move two or more substances across a
membrane, but in opposite directions.
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asexual reproduction
Asexual
reproduction is a biological process by which an organism creates a
genetically similar copy of itself without the combination of genetic material
with another individual. For example, the Hydra (invertebrates of the order
Hydroidea) and yeast are able to reproduce by budding. Most plants are capable
of vegetative reproduction.
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ATP
Adenosine triphosphate (commonly called ATP)
is the "molecular currency" of intracellular energy transfers. It is a means of
storing and transporting chemical energy within the cell and a precursor for RNA
formation. Chemically, adenosine triphosphate consists of the adenosine
nucleotide (which is ribose sugar and adenine base) plus three phosphate groups.
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ATP
Synthase
A large protein complex embedded in certain membranes that uses the
potential energy of a proton gradient to synthesize ATP; important in
photosynthetic electron transport and aerobic respiration electron transport.
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autosomes (wikipedia reference) redirected to
chromosome
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chromosome
A chromosome is, minimally, a very long, continuous piece of
DNA, which contains many genes, regulatory elements and other intervening
nucleotide sequences. In the chromosomes of eukaryotes, the uncondensed DNA
exists in a quasi-ordered structure inside the nucleus, where it wraps around
histones (structural proteins, Fig. 1), and where this composite material is
called chromatin. During mitosis (nuclear division), the chromosomes are
condensed and called
metaphasic chromosomes. This is the only natural context in which DNA is
visible with an optical microscope. Prokaryotes do not possess histones or
nuclei. In its relaxed state, the DNA can be accessed for transcription,
regulation, and replication.
Autosomes are chromosomes that carry genes not related to sex determination; sex
chromosomes carry genes related to the determinance of sexual characteristics. |
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autotroph
An autotroph is an organism that produces its own organic
compounds from inorganic substances (e.g., minerals) using either light or
chemical bonds as a source of energy. Plants and other organisms using
photosynthesis are photoautotrophs; bacteria that use utilize inorganic
compounds, such as hydrogen sulfide or ferric iron, for energy are
chemoautotrophs.
Autotrophs are a vital part of the food chain. They take energy
from the sun or from inorganic sources and convert it into a form (organic
molecules) that other organisms (heterotrophs) can use as food, obtaining energy
by breaking down the organic molecules. Heterotrophs, like animals, fungi, and
most bacteria and protozoa, depend on autotrophs for energy and for the raw
materials to make complex organic molecules. Even carnivorous animals ultimately
rely on autotrophs because the energy gained from the prey comes from the
autotrophs eaten by the prey.
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