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Biology 545 - Theory
and Practice of Phylogeny Estimation
Syllabus
Old Exam 1
Answers to Problem Set
Lab Readings
Lab Exercise 1
Lab 1 Lecture Notes
Data Set
Lab Exercise 2
Lab Exercise 3
Formatted Data Set
Lab Exercise 4
Lab Exercise 5
Lab Exercise 6
Lecture 1 - Introduction to Systematics & History of Phylogenetics
Lecture 2 - Phylogenetic Characters
Lecture 3 - Alignment
Lecture 4 - Introduction to Trees and Parsimony
Lecture 5 - Optimality Criteria: Maximum Likelihood & Minimum Evolution
Lecture 6 - Star Decomposition: Neighbor Joining
Lecture 7 - Parsimony Weighting
Lecture 8 - The Importance of Models
Lecture 9 - Models of DNA Sequence Evolution
Lecture 9B - Increasing Model Complexity
Lecture 10 - Model Selection
Lecture 11 - Support & Phylogenetic Uncertainty
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