Steve Krone: Research Papers
- Modeling the directed evolution of broad host range phages
Bull JJ, Wichman HA, Krone SM.
Antibiotics (2022) 11, 1709. https://doi.org/10.3390/antibiotics11121709
abstract |
pdf
- Modeling the therapeutic potential of defective interfering particles in the
presence of immunity
Karki B, Bull JJ, Krone SM.
Virus Evolution (2022) DOI: https://doi.org/10/1093/ve/veac047
abstract |
pdf
- The coalescent with replication-independent
mutations
Krone SM, Tuschhoff BM.
PeerJ (2022) 10:e12926 DOI 10.7717/peerj.12926
abstract |
pdf
- A white noise approach to evolutionary ecology
Week R, Nuismer SL, Harmon LJ, and Krone SM. Journal of Theoretical
Biology (2021), https://doi.org/10.1016/j.jtbi.2021.110660.
abstract |
pdf
- Vector dynamics influence spatially imperfect genetic
interventions against disease
Yuksel MK, Remien CH, Karki B, Bull JJ, and Krone SM. Evolution, Medicine
and Public Health (2021), http://doi:10.1093/emph/eoaa035.
abstract |
pdf
- The timing and nature of behavioural responses affect the course of an
epidemic
Tyson RC, Hamilton SD, Lo AS, Baumgaertner BO, and Krone SM. Bulletin of
Mathematical Biology (2020), 82: 14.
https://doi.org/10.1007/s11538-019-00684-z.
abstract |
pdf
- Spatial structure undermines parasite suppression by gene drive cargo
Bull JJ, Remien CH, Gomulkiewicz R, and Krone SM. PeerJ (2019), 7:e7921,
http://doi.org/10.7717/peerj.7921.
abstract |
pdf
- Voter models and external influence
Majmudar JR, Krone SM, Baumgaertner BO, and Tyson RC. Journal of Mathematical
Sociology (2019), doi.org/10.1080/0022250X.2019.1625349
abstract |
pdf
- Gene-drive-mediated extinction is thwarted by evolution of sib mating
Bull JJ, Remien CH, and Krone SM. Evolution, Medicine, and Public Health
(2019), pp. 66-81 doi:10.1093/emph/eoz014
abstract |
pdf
- Phage-Bacterial Dynamics with Spatial Structure: self organization
around phage sinks can promote high cell densities
Bull JJ, Christensen K, Scott C, Jack BR, Crandall C, and Krone SM.
Antibiotics (Special Issue on "Bacteriophages: Alternatives to
Antibiotics and Beyond")
(2018), doi:10.3390/antibiotics7010008.
abstract |
pdf
- Spatial opinion dynamics and the effects of two types of mixing
Baumgaertner BO, Tyson RC, Fetros PA, and Krone SM. Physical Review E (2018)
E98, 022310.
abstract |
pdf
- Paul Joyce and the infinite alleles model
Krone SM.
Theoretical Population Biology (2018) 122, 3-4.
abstract |
pdf
- Evolution and the duration of a doomed population
Gomulkiewicz R, Krone SM, Remien CH. Evolutionary Applications (2017)
1-14. DOI: 10.1111/eva.12467.
abstract |
pdf
- Opinion strength influences the spatial dynamics of opinion formation
Baumgaertner BO, Tyson RC, and Krone SM. Journal of Mathematical Sociology
(2016) 40, 207-218.
abstract |
pdf
- Planning horizon affects prophylactic decision-making and epidemic
dynamics
Nardin LG, Miller CR, Ridenhour BJ, Krone SM, Joyce P, Baumgaertner BO.
PeerJ (2016) 4:e2678
DOI 10.7717/peerj.2678.
abstract |
pdf
- A computational model of the rainbow trout
hypothalamus-pituitary-ovary-liver axis
Gillies K, Krone SM, Nagler JJ, and Schultz IR.
PLoS Computational Biology (2016) 12(4):
e1004874. doi:10.1371/journal.
pcbi.1004874.
abstract |
pdf
- Models for the directed evolution of
bacterial allelopathy: bacteriophage
lysins
Bull JJ, Crandall C, Rodriguez A, and Krone SM.
PeerJ (2015) 3:e879;
DOI 10.7717/peerj.879.
abstract |
pdf
- The impact of spatial structure on viral genomic diversity generated
during adaptation to thermal stress
Ally D, Wiss VR, Deckert G, Green D, Roychoudhury P, Wichman HA, Brown CJ,
and Krone SM.
PLoS ONE (2014) 9, e88702.
abstract |
pdf
- Fitness benefits of low infectivity in a spatially structured
population of bacteriophages
Roychoudhury P, Shrestha N, Wiss VR, Krone SM. Proceedings of the Royal
Society B (2014) 281, 20132563.
abstract |
pdf
- Adaptive regulatory substitutions affect multiple
stages in the life cycle of the bacteriophage
phiX174
(with C.J. Brown, A.D. Stancik, P. Roychoudhury) BMC Evolutionary
Biology (2013) 13, 66.
abstract |
pdf
- Invasion of E. coli biofilms by antibiotic resistance plasmids
(with J. Król, A. Wojtowicz, L.M. Rogers, H. Heuer, K.
Smalla, E.M. Top)
Plasmid (2013) 70(1): 110-119.
abstract |
pdf
- Influence of humans on evolution and mobilization of the environmental
antibiotic resistome
Gaze WH, Krone SM, Larsson J, Li X-Z, Robinson JA, Simonet P, Smalla K,
Timinouni M, Topp E, Wellington EM, Wright GD, Zhu Y-G. Emerging
Infectious Diseases (2013) 19.
abstract |
online article
- On the Meaning and Estimation of Plasmid Transfer Rates for
Surface-Associated and Well-Mixed Bacterial Populations
(with X. Zhong, J. Droesch, and E.M. Top). Journal of Theoretical
Biology (2012) 294, 144-152.
abstract |
pdf
- Stochastic Spatial Models. (2012) pp 666-670, in Hastings, A.
and Gross, L. (eds.) Encyclopedia of
Theoretical Ecology, University of California Press, Berkeley, CA.
- Increased transfer of a multi-drug resistance plasmid in
Esherichia coli biofilms at the air-liquid interface
(with J.E. Krol, H.D. Nguyen, L.M. Rogers, H. Beyenal, and E.M.
Top). Applied and Environmental Microbiology (2011)
77: 5079-5088.
abstract |
pdf
- Dual Reporter System for in situ Detection of Plasmid Transfer
in Aerobic and Anaerobic Conditions
(with J.E. Krol, L.M. Rogers, and E.M. Top). Applied
and Environmental Microbiology (2010) 76: 4553 - 4556.
abstract |
pdf
- Accounting for Mating Pair Formation in Plasmid Population
Dynamics
(with X. Zhong, J.E. Krol, and E.M. Top). Journal of Theoretical
Biology (2010) 262, 711-719.
abstract |
pdf
- Space, Time and Host Evolution Facilitate Coexistence of Competing
Bacteriophages: Theory and Experiment
(with L.C. Coberly, W. Wei, K.Y. Sampson, J. Millstein, and H.A. Wichman).
American Naturalist (2009) 173, E121-E138.
abstract |
pdf
- Application of Ecological Network Theory to the Human
Microbiome
(with J.A. Foster and L.J. Forney). Interdisciplinary Perspectives on
Infectious Diseases (2008) Article ID 839501, 6 pages.
abstract | pdf
- Spatial Structure and Nutrients Promote Invasion of
IncP-1 Plasmids
in Bacterial Populations
(with R. Fox, X. Zhong, and E.M. Top). The ISME Journal:
Multidisciplinary
Journal of Microbial Ecology (2008) 2, 1024-1039.
abstract |
pdf
- Modeling Phage Plaque Growth
(with S.T. Abedon). (2008) In
Bacteriophage Ecology: Population Growth, Evolution, and
Impact of Bacterial Viruses, Cambridge University Press,
Abedon, S.T. (ed).
- Modeling the Spatial Dynamics of Plasmid Transfer and Persistence
(with R. Lu, R. Fox, H. Suzuki, and E.M. Top). Microbiology (2007)
153, 2803-2816.
abstract |
pdf
- Small-World MCMC and Convergence to
Multi-modal Distributions: From Slow Mixing to Fast Mixing
(with Y. Guan). Annals of Applied Probability (2007) 17,
284-304.
abstract |
pdf
- Analyzing Animal Movements Using Brownian Bridges
(with J. Horne, E.O. Garton, and J.S. Lewis). Ecology (2007)
88, 2354-2363.
abstract |
pdf |
Appendix
- Spatial Self-Organization in a Cyclic Resource-Species Model
(with Y. Guan). Journal of Theoretical Biology (2006) 241,
14-25.
abstract |
pdf
- Markov Chain Monte Carlo in Small Worlds
(with Y. Guan, R. Fleissner, P. Joyce). Statistics and Computing (2006)
16, 193-202.
abstract | pdf
- Spatial Invasion by a Mutant Pathogen
(with W. Wei). Journal of Theoretical Biology (2005)
236, 335-348.
abstract |
pdf
- On the Meaning and Existence of an Effective Population Size
(with P. Sjödin, I. Kaj,
M. Lascoux, M. Nordborg).
Genetics (2005) 169, 1061-1070.
abstract |
pdf
- Spatial Models: Stochastic and Deterministic
Mathematical and Computer Modelling (2004) 40, 393-409.
abstract | pdf
- WinSSS: Stochastic Spatial Simulator
(with Y. Guan) Bulletin of Ecological Society of America
(2004) 85, Number 3, 102-104.
- On the Evolution of Structure in Ecological Networks
(with M. Labrum, T. Soule,
A. Blue).
Proceedings of 5th International Conference on Complex Systems 2004.
abstract |
pdf |
ps
- The Coalescent Process in a Population with Stochastically
Varying Size
(with I. Kaj).
Journal of Applied Probability (2003) 40, 33-48.
abstract |
pdf
- When Can One Detect Overdominant Selection in the
Infinite Alleles Model?
(with P. Joyce and
T.G. Kurtz).
Annals of Applied
Probability (2003) 13, 181-212.
abstract |
pdf |
dvi
- Separation of Time Scales and Convergence to the Coalescent
in Structured Populations
(with M. Nordborg).
(2002) In Modern Developments in Theoretical Population
Genetics, pp. 194-232,
M. Slatkin and M. Veuille, editors. Oxford University Press.
abstract | pdf |
ps
- Gaussian Limits Associated with the Poisson-Dirichlet
Distribution and the Ewens Sampling Formula
(with P. Joyce and
).
Annals of Applied
Probability (2002) 12, 101-124.
abstract | pdf
- Coalescent Theory for Seed Bank Models
(with I. Kaj and
M. Lascoux).
Journal of Applied Probability (2001) 38, 285-300.
abstract | pdf |
figure 1
- A Spatial Model of Range-Dependent Succession
(with C. Neuhauser).
Journal of Applied Probability (2000) 37, 1044-1060.
abstract
- The Two-Stage Contact Process
Annals of Applied Probability (1999) 9, 331-351.
abstract
- Ancestral Processes with Selection
(with
C. Neuhauser).
Theoretical Population Biology (1997) 51, 210-237.
abstract | pdf
- The Genealogy of Samples in Models with Selection
(with
C. Neuhauser). Genetics (1997) 145, 519-534.
abstract
- Representations for Continuous Additive Functionals of Super-Brownian
and Super-Stable Processes
Statistics and Probability
Letters (1997) 34, 211-223.
abstract
- Stepping Stone Models with Extinction and Recolonization
(with H. Kang and
C. Neuhauser). Annals of Applied Probability (1995)
5, 1025-1060.
abstract
- Comparing Fleming-Viot and Dawson-Watanabe Processes
(with S.N.
Ethier). Stochastic Processes and their Applications (1995)
60, 171-190.
abstract
- Conditioned Superprocesses and their Weighted Occupation Times
Statistics and Probability Letters (1995) 22, 59-69.
abstract
- A note on the stepping stone model with extinction and
recolonization
(with H. Kang and C. Neuhauser). IMA Proceedings: Progress in
Population Genetics
and Human Evolution (1994), P. Donnelley and S. Tavare (Eds.).
Springer, New York
- Local Times for Superdiffusions
Annals of Probability (1993) 21, pp. 1599-1623
For paper versions of the above, please email me
(krone@uidaho.edu).