• Increased transfer of a multi-drug resistance plasmid in Esherichia coli biofilms at the air-liquid interface
  (with J.E. Krol, H.D. Nguyen, L.M. Rogers, H. Beyenal, and E.M. Top). Applied and Environmental Microbiology (2011) 77: 5079-5088.
  abstract | pdf

• On the Meaning and Estimation of Plasmid Transfer Rates for Surface-Associated and Well-Mixed Bacterial Populations
  (with X. Zhong, J. Droesch, and E.M. Top). Journal of Theoretical Biology (2011) in press.
  

• Stochastic Spatial Models. Sourcebook in Theoretical Ecology. (2011).

• Dual Reporter System for in situ Detection of Plasmid Transfer in Aerobic and Anaerobic Conditions
  (with J.E. Krol, L.M. Rogers, and E.M. Top). Applied and Environmental Microbiology (2010) 76: 4553 - 4556.
  abstract | pdf

• Accounting for Mating Pair Formation in Plasmid Population Dynamics
  (with X. Zhong, J.E. Krol, and E.M. Top). Journal of Theoretical Biology (2010) 262, 711-719.
  abstract | pdf

• Space, Time and Host Evolution Facilitate Coexistence of Competing Bacteriophages: Theory and Experiment
  (with L.C. Coberly, W. Wei, K.Y. Sampson, J. Millstein, and H.A. Wichman). American Naturalist (2009) 173, E121-E138.
  abstract | pdf

• Application of Ecological Network Theory to the Human Microbiome
  (with J.A. Foster and L.J. Forney). Interdisciplinary Perspectives on Infectious Diseases (2008) Article ID 839501, 6 pages.
  abstract | pdf

• Spatial Structure and Nutrients Promote Invasion of IncP-1 Plasmids in Bacterial Populations
  (with R. Fox, X. Zhong, and E.M. Top). The ISME Journal: Multidisciplinary Journal of Microbial Ecology (2008) 2, 1024-1039.
  abstract | pdf

• Modeling Phage Plaque Growth
  (with S.T. Abedon). (2008) In Bacteriophage Ecology: Population Growth, Evolution, and Impact of Bacterial Viruses, Cambridge University Press, Abedon, S.T. (ed).
  

• Modeling the Spatial Dynamics of Plasmid Transfer and Persistence
  (with R. Lu, R. Fox, H. Suzuki, and E.M. Top). Microbiology (2007) 153, 2803-2816.
  abstract | pdf

• Small-World MCMC and Convergence to Multi-modal Distributions: From Slow Mixing to Fast Mixing
  (with Y. Guan). Annals of Applied Probability (2007) 17, 284-304.
  abstract | pdf

• Analyzing Animal Movements Using Brownian Bridges
  (with J. Horne, E.O. Garton, and J.S. Lewis). Ecology (2007) 88, 2354-2363.
  abstract | pdf | Appendix

• Spatial Self-Organization in a Cyclic Resource-Species Model
  (with Y. Guan). Journal of Theoretical Biology (2006) 241, 14-25.
  abstract | pdf

• Markov Chain Monte Carlo in Small Worlds
  (with Y. Guan, R. Fleissner, P. Joyce). Statistics and Computing (2006) 16, 193-202.
  abstract | pdf

• Spatial Invasion by a Mutant Pathogen
  (with W. Wei). Journal of Theoretical Biology (2005) 236, 335-348.
  abstract | pdf

• On the Meaning and Existence of an Effective Population Size
  (with P. Sjödin, I. Kaj, M. Lascoux, M. Nordborg). Genetics (2005) 169, 1061-1070.
  abstract | pdf

• Spatial Models: Stochastic and Deterministic
  Mathematical and Computer Modelling (2004) 40, 393-409.
  abstract | pdf

• WinSSS: Stochastic Spatial Simulator
  (with Y. Guan) Bulletin of Ecological Society of America (2004) 85, Number 3, 102-104.

• On the Evolution of Structure in Ecological Networks
  (with M. Labrum, T. Soule, A. Blue). Proceedings of 5th International Conference on Complex Systems 2004.
  abstract | pdf | ps

• The Coalescent Process in a Population with Stochastically Varying Size
  (with I. Kaj). Journal of Applied Probability (2003) 40, 33-48.
  abstract | pdf

• When Can One Detect Overdominant Selection in the Infinite Alleles Model?
  (with P. Joyce and T.G. Kurtz). Annals of Applied Probability (2003) 13, 181-212.
  abstract | pdf | dvi

• Separation of Time Scales and Convergence to the Coalescent in Structured Populations
  (with M. Nordborg). (2002) In Modern Developments in Theoretical Population Genetics, pp. 194-232, M. Slatkin and M. Veuille, editors. Oxford University Press.
  abstract | pdf | ps

• Gaussian Limits Associated with the Poisson-Dirichlet Distribution and the Ewens Sampling Formula
  (with P. Joyce and T.G. Kurtz). Annals of Applied Probability (2002) 12, 101-124.
  abstract | pdf

• Coalescent Theory for Seed Bank Models
  (with I. Kaj and M. Lascoux). Journal of Applied Probability (2001) 38, 285-300.
  abstract | pdf | figure 1

• A Spatial Model of Range-Dependent Succession
  (with C. Neuhauser). Journal of Applied Probability (2000) 37, 1044-1060.
  abstract

• The Two-Stage Contact Process
  Annals of Applied Probability (1999) 9, 331-351.
  abstract

• Ancestral Processes with Selection
  (with C. Neuhauser). Theoretical Population Biology (1997) 51, 210-237.
  abstract | pdf

• The Genealogy of Samples in Models with Selection
  (with C. Neuhauser). Genetics (1997) 145, 519-534.
  abstract

• Representations for Continuous Additive Functionals of Super-Brownian and Super-Stable Processes
  Statistics and Probability Letters (1997) 34, 211-223.
  abstract

• Stepping Stone Models with Extinction and Recolonization
  (with H. Kang and C. Neuhauser). Annals of Applied Probability (1995) 5, 1025-1060.
  abstract

• Comparing Fleming-Viot and Dawson-Watanabe Processes
  (with S.N. Ethier). Stochastic Processes and their Applications (1995) 60, 171-190.
  abstract

• Conditioned Superprocesses and their Weighted Occupation Times
  Statistics and Probability Letters (1995) 22, 59-69.
  abstract

For paper versions of the above, please email me (krone@uidaho.edu).

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