Steve Krone: Research by Subject
Most of this work was supported by the National Institutes of Health
and the National Science Foundation.
Spatial Structure
- Phage-Bacterial Dynamics with Spatial Structure: self organization
around phage sinks can promote high cell densities
Bull JJ, Christensen K, Scott C, Jack BR, Crandall C, and Krone SM.
Antibiotics (Special Issue on "Bacteriophages: Alternatives to
Antibiotics and Beyond")
(2018), doi:10.3390/antibiotics7010008.
abstract |
pdf
- Models for the directed evolution of
bacterial allelopathy: bacteriophage
lysins
Bull JJ, Crandall C, Rodriguez A, and Krone SM.
PeerJ (2015) 3:e879;
DOI 10.7717/peerj.879.
abstract |
pdf
- The impact of spatial structure on viral genomic diversity generated
during adaptation to thermal stress
Ally D, Wiss VR, Deckert G, Green D, Roychoudhury P, Wichman HA, Brown CJ,
and Krone SM.
PLoS ONE (2014) 9, e88702.
abstract |
pdf
- Fitness benefits of low infectivity in a spatially structured
population of bacteriophages
Roychoudhury P, Shrestha N, Wiss VR, Krone SM. Proceedings of the Royal
Society B (2014) 281, 20132563.
abstract |
pdf
- Adaptive regulatory substitutions affect multiple
stages in the life cycle of the bacteriophage
phiX174
(with C.J. Brown, A.D. Stancik, P. Roychoudhury) BMC Evolutionary
Biology (2013) 13, 66.
abstract |
pdf
- Invasion of E. coli biofilms by antibiotic resistance plasmids
(with J. Król, A. Wojtowicz, L.M. Rogers, H. Heuer, K.
Smalla, E.M. Top)
Plasmid (2013) 70(1): 110-119.
abstract |
pdf
- Influence of humans on evolution and mobilization of the environmental
antibiotic resistome
Gaze WH, Krone SM, Larsson J, Li X-Z, Robinson JA, Simonet P, Smalla K,
Timinouni M, Topp E, Wellington EM, Wright GD, Zhu Y-G. Emerging
Infectious Diseases (2013) 19.
abstract |
online article
- On the Meaning and Estimation of Plasmid Transfer Rates for
Surface-Associated and Well-Mixed Bacterial Populations
(with X. Zhong, J. Droesch, and E.M. Top). Journal of Theoretical
Biology (2012) 294, 144-152.
abstract |
pdf
- Stochastic Spatial Models. (2012) pp 666-670, in Hastings, A.
and Gross, L. (eds.) Encyclopedia of
Theoretical Ecology, University of California Press, Berkeley, CA.
- Increased transfer of a multi-drug resistance plasmid in
Esherichia coli biofilms at the air-liquid interface
(with J.E. Krol, H.D. Nguyen, L.M. Rogers, H. Beyenal, and E.M.
Top). Applied and Environmental Microbiology (2011)
77: 5079-5088.
abstract |
pdf
- Dual Reporter System for in situ Detection of Plasmid Transfer
in Aerobic and Anaerobic Conditions
(with J.E. Krol, L.M. Rogers, and E.M. Top). Applied
and Environmental Microbiology (2010) 76: 4553 - 4556.
abstract |
pdf
- Accounting for Mating Pair Formation in Plasmid Population Dynamics
(with X. Zhong, J.E. Krol, and E.M. Top). Journal of Theoretical
Biology (2010) 262, 711-719.
abstract |
pdf
- Space, Time and Host Evolution Facilitate Coexistence of Competing
Bacteriophages: Theory and Experiment
(with L.C. Coberly, W. Wei, K.Y. Sampson, J. Millstein, and H.A. Wichman).
American Naturalist (2009) 173, E121-E138.
abstract |
pdf
- Spatial Structure and Nutrients Promote Invasion of
IncP-1 Plasmids
in Bacterial Populations
(with R. Fox, X. Zhong, and E.M. Top). The ISME Journal:
Multidisciplinary
Journal of Microbial Ecology (2008) 2, 1024-1039.
abstract |
pdf
- Modeling Phage Plaque Growth
(with S.T. Abedon). (2008) In
Bacteriophage Ecology: Population Growth, Evolution, and
Impact of Bacterial Viruses, Cambridge University Press, Abedon, S.T.
(ed).
- Modeling the Spatial Dynamics of Plasmid Transfer and Persistence
(with R. Lu, R. Fox, H. Suzuki, and E.M. Top). Microbiology (2007)
153, 2803-2816.
abstract |
pdf
- Analyzing Animal Movements Using Brownian Bridges
(with J. Horne, E.O. Garton, and J.S. Lewis). Ecology (2007)
88, 2354-2363.
abstract |
pdf |
Appendix
- Spatial Self-Organization in a Cyclic Resource-Species Model
(with Y. Guan). Journal of Theoretical Biology (2006) 241,
14-25.
abstract |
pdf
- Spatial Invasion by a Mutant Pathogen
(with W. Wei). Journal of Theoretical Biology
(2005) 236, 335-348.
abstract |
pdf
- WinSSS: Stochastic Spatial Simulator
(with Y. Guan) Bulletin of Ecological Society of America
(2004) 85, Number 3, 102-104.
- Spatial Models: Stochastic and Deterministic
Mathematical and Computer Modelling (2004) 40, 393-409.
abstract | pdf
- A Spatial Model of Range-Dependent Succession
(with
C. Neuhauser).
Journal of Applied Probability (2000) 37, 1044-1060.
abstract
- The Two-Stage Contact Process
Annals of Applied Probability (1999) 9, 331-351.
abstract
- Stepping Stone Models with Extinction and Recolonization
(with H. Kang and
C. Neuhauser). Annals of Applied Probability (1995)
5, 1025-1060.
abstract
- A Note on the Stepping Stone Model with Extinction and Recolonization
(with H. Kang and C. Neuhauser). (1994) In Progress in Population
Genetics and Human Evolution. P. Donnelly and S. Tavare, eds.
Springer, New York.
Nonspatial Evolution
- Adaptive regulatory substitutions affect multiple
stages in the life cycle of the bacteriophage
phiX174
(with C.J. Brown, A.D. Stancik, P. Roychoudhury) BMC Evolutionary
Biology (2013) 13, 66.
abstract |
pdf
Theoretical Population Genetics
1. Coalescent Theory
- On the Meaning and Existence of an Effective Population Size
(with P. Sjödin, I. Kaj,
M. Lascoux, M. Nordborg).
Genetics (2005) 169, 1061-1070.
abstract |
pdf
- The Coalescent Process in a Population with Stochastically
Varying Size
(with I. Kaj).
Journal of Applied Probability (2003) 40, 33-48.
abstract |
pdf
- Separation of Time Scales and Convergence to the Coalescent
in Structured Populations
(with M. Nordborg).
(2002) In Modern Developments in Theoretical Population
Genetics, pp. 194-232,
M. Slatkin and M. Veuille, editors. Oxford University Press.
abstract | pdf |
ps
- Coalescent Theory for Seed Bank Models
(with I. Kaj and
M. Lascoux).
Journal of Applied Probability (2001) 38, 285-300.
abstract | pdf |
figure 1
- Ancestral Processes with Selection
(with
C. Neuhauser).
Theoretical Population Biology (1997) 51, 210-237.
abstract | pdf
- The Genealogy of Samples in Models with Selection
(with
C. Neuhauser). Genetics (1997) 145, 519-534.
abstract
2. Diffusion Processes
- Evolution and the duration of a doomed population
Gomulkiewicz R, Krone SM, Remien CH. Evolutionary Applications (2017)
1-14. DOI: 10.1111/eva.12467.
abstract |
pdf
- When Can One Detect Overdominant Selection in the
Infinite Alleles Model?
(with P. Joyce and
T.G. Kurtz).
Annals of Applied
Probability (2003) 13, 181-212.
abstract |
pdf |
dvi
- Gaussian Limits Associated with the Poisson-Dirichlet
Distribution and the Ewens Sampling Formula
(with P. Joyce and
T.G. Kurtz).
Annals of Applied
Probability (2002) 12, 101-124.
abstract | pdf
Markov Chain Monte Carlo
- Small-World MCMC and Convergence to
Multi-modal Distributions: From Slow Mixing to Fast Mixing
(with Y. Guan). Annals of Applied Probability (2007) 17, 284-304.
abstract |
pdf
- Markov Chain Monte Carlo in Small Worlds
(with Y. Guan, R. Fleissner, P. Joyce). Statistics and Computing (2006)
16, 193-202.
abstract | pdf
Random Networks
- Application of Ecological Network Theory to the Human Microbiome
(with J.A. Foster and L.J. Forney). Interdisciplinary Perspectives on
Infectious Diseases (2008) Article ID 839501, 6 pages.
abstract | pdf
- On the Evolution of Structure in Ecological Networks
(with M. Labrum, T. Soule,
A. Blue).
Proceedings of 5th International Conference on Complex Systems 2004.
abstract |
pdf |
ps
Measure-Valued Diffusions
- Representations for Continuous Additive Functionals of Super-Brownian
and Super-Stable Processes
Statistics and Probability
Letters (1997) 34, 211-223.
abstract
- Comparing Fleming-Viot and Dawson-Watanabe Processes
(with S.N.
Ethier). Stochastic Processes and their Applications (1995)
60, 171-190.
abstract
- Conditioned Superprocesses and their Weighted Occupation Times
Statistics and Probability Letters (1995) 22, 59-69.
abstract
- Local Times for Superdiffusions
Annals of Probability (1993)
21, 1599-1623.
For paper versions of the above, please email me
(krone@uidaho.edu).
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